Collateral flow is an important, yet poorly understood compensatory mechanism in response to brain hypoperfusion. Unilateral internal carotid artery occlusion in the mouse is a model to study collateral growth of penetrating arterioles. We hypothesized that this process could be assessed in vivo by high resolution MR microangiography with iron oxide nanoparticles. Since our MR vessel density measurements contradicted previous histological findings we established atlas tools to validate angiograms with microscopy on vessel-stained tissue slices or with whole brain serial two photon microscopy.
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