There are many ways to acquire and process diffusion MRI data. However, it is not known which yields the largest effect sizes in group studies. We evaluated the impact of different acquisitions (3T versus 7T and DTI versus DKI) and post-processing strategies (motion correction, Gibbs-ringing and denoising) on effect size estimates of white matter (WM) injury in patients with Systemic Lupus Erythematosus (SLE). Results showed that fractional anisotropy (FA) from a 3T DTI acquisition yielded the largest effect sizes.
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