This abstract presents an integrated tool, namely BrainQuan, developed in Python to automatically segment the brain MRI into sub-regions, align the multi-parametric MRI data into the same space, and then extract the region-specific information from quantitative MRI data, such as quantitative susceptibility maps and diffusion parameters in these brain sub-regions. This tool provides an easy and comprehensive solution for several pilot studies spanning a range of applications: infant brain, brain morphology analysis and neuro-degenerative diseases. BrainQuan might be helpful to establish potential biomarkers from many different quantitative brain MRI data.
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