Global signal regression (GSR) is under debate whether or not influences the interpretation of functional connectivity (FC). However, few studies have compared and discussed the classification performance of GSR on a large dataset. We used a large dataset of resting-state fMRI data with 1082 subjects to test whether GSR influences the FC-based classification performance. We reached 81.35%-84.36% test accuracy using nested cross-validation. We tested the contribution of GSR, feature whitening and classifiers to the classification accuracy variance using three-way ANOVA and found significant main effects only for the GSR factor (F=7.14, P=0.0089). The results suggest GSR improves the classification accuracy.
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