A software framework for fully automated analysis in 3D of regional distribution of biochemical MRI values in knee cartilage sub-regions was proposed. The framework was compared to values extracted using manual segmentations and strong agreement with the automated measures was found. The framework was applied in a preliminary analysis to assess the reproducibility of T2 relaxation time measurements at 3T with promising results. The proposed automated framework can facilitate investigations and advance the search for biomarkers of pathophysiological processes preceding the development of osteoarthritis.
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