The cranial nerve systems of the human brainstem are challenging to distinguish from their complex architectural surroundings, but anisotropy, orientation and tract-based diffusion MRI methods may address these challenges and enable mapping intraparenchymal trajectories of the cranial nerves. The objective of this study was to apply and evaluate DTI and tractography tools for segmentation and mapping of the cranial nerve systems at high spatial resolution in post-mortem human brainstems. Our findings demonstrate the salient features of scalar, directional and tract-based maps for distinguishing the cranial nerves and their nuclei with attention to their relative geometric complexity and architectural environment.
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