A number of advanced diffusion models have demonstrated great promise for mapping tissue microstructure in ex vivo studies with high resolution and fidelity using a wide range of diffusion weightings, but the increased acquisition time (days) is not feasible in vivo. In this study we have addressed some basic DWI acquisition pitfalls by using 3D single-shot EPI on a high-field (7 Tesla) pre-clinical MRI system, and adapted one of the most promising diffusion modeling techniques, mean apparent propagator (MAP) MRI in vivo to derive information about rat brain microstructure within a reasonable time frame.
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